STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114654425Low-density lipoprotein receptor-related protein 2-like. (2845 aa)    
Predicted Functional Partners:
agrn
Agrin.
    
 0.891
dkk1
Dickkopf WNT signaling pathway inhibitor 1.
    
 0.843
LOC114654769
Growth arrest-specific protein 1-like.
     
 0.828
ptch1
Patched 1.
     
 0.825
ptch2
Patched 2.
     
 0.825
lrpap1
LDL receptor related protein associated protein 1.
    
 0.819
ENSECRP00000022214
annotation not available
    
 0.818
apoe
Apolipoprotein E.
    
 0.805
pcsk9
Proprotein convertase subtilisin/kexin type 9.
    
 0.759
reln
Reelin.
    
 0.750
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.