STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114655206Mitoferrin-1-like. (333 aa)    
Predicted Functional Partners:
nars2
asparaginyl-tRNA synthetase 2, mitochondrial.
 
   
  0.950
fxn
Frataxin.
    
 
 0.664
nars1
asparaginyl-tRNA synthetase 1.
 
   
  0.633
abcb7
ATP binding cassette subfamily B member 7.
    
 
 0.592
LOC114644460
ATP-binding cassette sub-family B member 10, mitochondrial-like.
    
 
 0.571
fech
Ferrochelatase.
   
  
 0.566
LOC114660602
5-aminolevulinate synthase, erythroid-specific, mitochondrial-like.
   
  
 0.503
mrs2
Magnesium transporter MRS2.
    
 
 0.486
arih1
Ariadne RBR E3 ubiquitin protein ligase 1.
 
      0.480
glrx5
Glutaredoxin 5.
   
  
 0.448
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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