STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh4alkB homolog 4, lysine demethylase. (290 aa)    
Predicted Functional Partners:
traf6
TNF receptor associated factor 6.
    
  0.741
rnf41
Ring finger protein 41.
    
  0.741
dohh
Deoxyhypusine hydroxylase.
   
    0.657
apex1
Apurinic/apyrimidinic endodeoxyribonuclease 1.
 
      0.607
alkbh7
alkB homolog 7.
   
  
 0.594
mettl4
Methyltransferase like 4.
      
 0.584
alkbh1
alkB homolog 1, histone H2A dioxygenase.
   
  
 0.568
alkbh6
alkB homolog 6.
      
 0.562
n6amt1
N-6 adenine-specific DNA methyltransferase 1.
      
 0.561
jmjd4
Jumonji domain containing 4.
   
  
 0.531
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.