STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xrcc5X-ray repair cross complementing 5. (719 aa)    
Predicted Functional Partners:
xrcc6
X-ray repair cross complementing 6.
  
0.999
prkdc
Protein kinase, DNA-activated, catalytic subunit.
   
 0.998
dclre1c
DNA cross-link repair 1C.
    
 0.996
wrn
WRN RecQ like helicase.
    
 
 0.995
atm
ATM serine/threonine kinase.
    
 0.989
mre11
MRE11 homolog, double strand break repair nuclease.
   
 0.988
lig1
DNA ligase 1.
   
 0.984
lig3
DNA ligase 3.
   
 0.981
paxx
PAXX non-homologous end joining factor.
    
 0.978
brca1
BRCA1 DNA repair associated.
    
 0.976
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.