STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdlim2PDZ and LIM domain 2. (370 aa)    
Predicted Functional Partners:
pdlim4
PDZ and LIM domain 4.
     
0.930
LOC114652011
EH domain-binding protein 1-like protein 1.
   
 0.847
ehbp1
EH domain binding protein 1.
   
 0.847
ldb3
LIM domain binding 3.
    
 
0.822
myo6
Myosin VI.
    
 0.811
git1
GIT ArfGAP 1.
    
 0.779
git2
GIT ArfGAP 2.
    
 0.779
ptk2b
Protein tyrosine kinase 2 beta.
    
 0.761
ptk2
Protein tyrosine kinase 2.
    
 0.761
ENSECRP00000028048
annotation not available
    
 0.761
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.