STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam78bFamily with sequence similarity 78 member B. (261 aa)    
Predicted Functional Partners:
LOC114648548
Cytochrome b5 reductase 4.
    
 0.784
gusb
Glucuronidase beta.
   
 0.718
utp20
UTP20 small subunit processome component.
   
 0.717
ENSECRP00000001180
annotation not available
   
 0.705
cask
Calcium/calmodulin dependent serine protein kinase.
   
 0.691
rps6
Ribosomal protein S6.
   
  0.681
emg1
EMG1 N1-specific pseudouridine methyltransferase.
   
  0.676
rps7
Ribosomal protein S7.
    
  0.675
LOC114645178
DDB1- and CUL4-associated factor 13-like.
    
  0.675
utp11
UTP11 small subunit processome component.
    
  0.675
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.