STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000011486annotation not available (67 aa)    
Predicted Functional Partners:
sec61b
SEC61 translocon beta subunit.
   
 
 0.710
sgtb
Small glutamine rich tetratricopeptide repeat containing beta.
    
  0.632
sgta
Small glutamine rich tetratricopeptide repeat containing alpha.
    
  0.632
sec61g
SEC61 translocon gamma subunit.
   
 
  0.593
stx5
Syntaxin 5.
     
 0.568
ube2j2
Ubiquitin conjugating enzyme E2 J2.
     
 0.496
c1qtnf12
C1q and TNF related 12.
     
 0.483
LOC114653445
Cytochrome b5.
     
 0.441
ENSECRP00000022407
annotation not available
     
 0.441
xbp1
X-box binding protein 1.
   
 
 0.440
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.