STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimklaRibosomal modification protein rimK like family member A. (400 aa)    
Predicted Functional Partners:
nags
N-acetylglutamate synthase.
    
 0.901
ogdh
Oxoglutarate dehydrogenase.
   
 0.879
prdx5
Peroxiredoxin 5.
    
 0.876
nat8l
N-acetyltransferase 8 like.
     
 0.876
idh3b
Isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta.
    
 0.867
idh3g
Isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit gamma.
    
 0.867
idh3a
Isocitrate dehydrogenase (NAD(+)) 3 catalytic subunit alpha.
    
 0.867
cs
Citrate synthase.
    
 0.853
gatb
glutamyl-tRNA amidotransferase subunit B.
    
  0.840
idh1
Isocitrate dehydrogenase (NADP(+)) 1.
    
 0.834
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.