STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdx1Pancreatic and duodenal homeobox 1. (264 aa)    
Predicted Functional Partners:
spopl
Speckle type BTB/POZ protein like.
    
   0.706
spop
Speckle type BTB/POZ protein.
    
   0.706
pax6
Paired box 6.
   
0.609
LOC114642119
Insulin-like.
   
 
 0.596
ENSECRP00000015471
annotation not available
   
 
 0.596
mafa
MAF bZIP transcription factor A.
    
 0.580
foxa2
Forkhead box A2.
    
 0.563
foxa1
Forkhead box A1.
    
 0.563
LOC114660040
Paired box protein Pax-6-like.
   
0.559
pbx2
PBX homeobox 2.
    
 0.552
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.