STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114658842Histone H2B 8-like. (125 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.836
kdm6b
Lysine demethylase 6B.
    
 0.746
kdm6a
Lysine demethylase 6A.
    
 0.746
polr2c
RNA polymerase II subunit C.
    
 0.692
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
 
  
 0.670
polr2b
RNA polymerase II subunit B.
    
  0.667
LOC114648650
Histone H2A.V.
   
 0.662
LOC114654554
Histone H2A.Z.
   
 0.662
glyr1
Glyoxylate reductase 1 homolog.
    
   0.658
cdc73
Cell division cycle 73.
    
 0.653
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.