STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660543Ras-related protein Rab-7a-like. (205 aa)    
Predicted Functional Partners:
rab7a
RAB7A, member RAS oncogene family.
  
 
0.899
rab7b
RAB7B, member RAS oncogene family.
  
 
0.885
LOC114660631
Ras-related protein rab7-like.
  
 
0.883
trappc1
Trafficking protein particle complex 1.
    
 0.880
trappc4
Trafficking protein particle complex 4.
    
 0.873
trappc8
Trafficking protein particle complex 8.
    
 0.871
trappc2
Trafficking protein particle complex 2.
    
 0.866
lyrm4
LYR motif containing 4.
    
 0.852
tbc1d15
TBC1 domain family member 15.
     
 0.845
tbc1d17
TBC1 domain family member 17.
     
 0.845
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.