STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prpf40apre-mRNA processing factor 40 homolog A. (887 aa)    
Predicted Functional Partners:
sf3a1
Splicing factor 3a subunit 1.
   
 0.986
rbm25
RNA binding motif protein 25.
   
 0.972
sf3b1
Splicing factor 3b subunit 1.
   
 0.964
snrpc
Small nuclear ribonucleoprotein polypeptide C.
   
 0.962
u2af2
U2 small nuclear RNA auxiliary factor 2.
   
 0.958
luc7l3
LUC7 like 3 pre-mRNA splicing factor.
   
 0.945
lsm7
LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated.
    
  0.944
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.942
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
    
 0.942
snrpb
Small nuclear ribonucleoprotein polypeptides B and B1.
   
  0.939
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.