STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114643863Claudin-1-like. (218 aa)    
Predicted Functional Partners:
tjp3
Tight junction protein 3.
    
 0.861
LOC114653434
Dynamin-1-like protein.
    
 0.826
LOC114660635
Dynamin-1-like protein.
    
 0.826
dnm1
Dynamin 1.
    
 0.824
dnm2
Dynamin 2.
    
 0.824
pex19
Peroxisomal biogenesis factor 19.
    
 0.781
gdap1
Ganglioside induced differentiation associated protein 1.
    
 0.761
ENSECRP00000005669
annotation not available
    
 0.759
LOC114650730
Interferon-induced GTP-binding protein Mx-like.
    
 0.759
LOC114650664
Interferon-induced GTP-binding protein Mx-like.
    
 0.759
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.