STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
usp12Ubiquitin specific peptidase 12. (370 aa)    
Predicted Functional Partners:
wdr48
WD repeat domain 48.
    
 0.983
wdr20
WD repeat domain 20.
    
 0.945
LOC114641938
WD repeat-containing protein 20-like.
    
 0.945
rps27a
Ribosomal protein S27a.
    
  0.860
fancd2
FA complementation group D2.
    
 0.807
fanci
FA complementation group I.
   
 0.790
LOC114662601
Polyubiquitin-like.
    
 0.786
LOC114648872
Proliferating cell nuclear antigen.
   
  0.776
ENSECRP00000013561
annotation not available
    
  0.768
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.768
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.