STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114659364Interferon regulatory factor 4-like. (435 aa)    
Predicted Functional Partners:
traf6
TNF receptor associated factor 6.
   
 0.801
irf1
Interferon regulatory factor 1.
  
0.738
LOC114657245
C-C motif chemokine 5-like.
   
 
  0.721
ENSECRP00000019819
annotation not available
     
 0.690
LOC114653337
Serine/threonine-protein kinase Sgk3.
    
 0.684
LOC114657243
C-C motif chemokine 3-like.
   
 
  0.672
ep300
E1A binding protein p300.
    
 0.607
crebbp
CREB binding protein.
    
 0.591
rbbp4
RB binding protein 4, chromatin remodeling factor.
   
 0.584
LOC114641485
Histone-binding protein RBBP7.
   
 0.584
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.