STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cnot4CCR4-NOT transcription complex subunit 4. (784 aa)    
Predicted Functional Partners:
cnot9
CCR4-NOT transcription complex subunit 9.
    
 0.999
cnot2
CCR4-NOT transcription complex subunit 2.
    
 0.998
cnot3
CCR4-NOT transcription complex subunit 3.
   
 0.997
cnot7
CCR4-NOT transcription complex subunit 7.
    
 0.996
cnot8
CCR4-NOT transcription complex subunit 8.
    
 0.996
patl1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.980
patl2
PAT1 homolog 2.
    
 0.980
cnot1
CCR4-NOT transcription complex subunit 1.
    
 0.972
ENSECRP00000010814
annotation not available
    
 0.972
cnot11
CCR4-NOT transcription complex subunit 11.
     
 0.969
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.