STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abraxas1Abraxas 1, BRCA1 A complex subunit. (400 aa)    
Predicted Functional Partners:
babam1
BRISC and BRCA1 A complex member 1.
    
  0.866
brca1
BRCA1 DNA repair associated.
    
  0.855
babam2
BRISC and BRCA1 A complex member 2.
    
  0.641
brcc3
BRCA1/BRCA2-containing complex subunit 3.
    
  0.640
ENSECRP00000011256
annotation not available
    
  0.603
uimc1
Ubiquitin interaction motif containing 1.
   
 
  0.580
ENSECRP00000000849
annotation not available
    
  0.527
ythdc2
YTH domain containing 2.
    
  0.443
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.442
mrps11
Mitochondrial ribosomal protein S11.
    
  0.438
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.