STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114659375Probable tubulin polyglutamylase TTLL9. (462 aa)    
Predicted Functional Partners:
LOC114642700
Neuronal acetylcholine receptor subunit alpha-7-like.
   
 0.614
LOC114654954
Neuronal acetylcholine receptor subunit alpha-7-like.
   
 0.614
ttll12
Tubulin tyrosine ligase like 12.
    
 
 0.467
grin1
Glutamate ionotropic receptor NMDA type subunit 1.
   
 
 0.425
ENSECRP00000022622
annotation not available
   
    0.422
ENSECRP00000023865
annotation not available
   
    0.422
ENSECRP00000023907
annotation not available
   
    0.422
LOC114662007
Ankyrin repeat and fibronectin type-III domain-containing protein 1-like.
   
    0.422
ENSECRP00000011355
annotation not available
  
  
 0.401
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.