STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cadCarbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and dihydroorotase. (2267 aa)    
Predicted Functional Partners:
ass1
Argininosuccinate synthase 1.
 
 
 0.981
otc
Ornithine carbamoyltransferase.
   
0.976
dhodh
Dihydroorotate dehydrogenase (quinone).
  
 0.975
ENSECRP00000020420
annotation not available
  
 
 0.934
LOC114642117
Amidophosphoribosyltransferase-like.
  
 
 0.934
dpyd
Dihydropyrimidine dehydrogenase.
  
 0.923
LOC114657895
Adenylosuccinate synthetase isozyme 2-like.
  
 
 0.917
adss2
Adenylosuccinate synthase 2.
  
 
 0.917
gart
annotation not available
  
 
 0.908
gfpt2
Glutamine-fructose-6-phosphate transaminase 2.
   
 0.904
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.