STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660239Prolyl 4-hydroxylase subunit alpha-2-like. (559 aa)    
Predicted Functional Partners:
LOC114668307
Proline dehydrogenase 1, mitochondrial-like.
     
 0.827
prodh2
Proline dehydrogenase 2.
     
 0.827
pycr3
Pyrroline-5-carboxylate reductase 3.
     
 0.819
p4ha1
Prolyl 4-hydroxylase subunit alpha 1.
  
  
 
0.816
p4ha3
Prolyl 4-hydroxylase subunit alpha 3.
  
  
0.814
p4hb
Prolyl 4-hydroxylase subunit beta.
   
 0.808
ENSECRP00000027692
annotation not available
   
 0.782
ENSECRP00000027717
annotation not available
   
 0.782
LOC114646742
Protein disulfide-isomerase A3-like.
   
 0.699
pdia4
Protein disulfide isomerase family A member 4.
   
 0.699
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.