STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ythdf1YTH N6-methyladenosine RNA binding protein 1. (572 aa)    
Predicted Functional Partners:
zfc3h1
Zinc finger C3H1-type containing.
    
 0.883
cnot9
CCR4-NOT transcription complex subunit 9.
    
  0.734
rbm27
RNA binding motif protein 27.
   
 0.695
rbm26
RNA binding motif protein 26.
   
 0.695
mettl14
Methyltransferase like 14.
  
   
 0.691
wtap
WT1 associated protein.
  
  
 0.682
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.646
ENSECRP00000030566
annotation not available
   
 0.630
papola
poly(A) polymerase alpha.
   
 0.630
cnot7
CCR4-NOT transcription complex subunit 7.
    
 
 0.622
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.