STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
slc13a5Solute carrier family 13 member 5. (553 aa)    
Predicted Functional Partners:
mlycd
malonyl-CoA decarboxylase.
    
 0.646
ENSECRP00000023429
annotation not available
    
 0.646
slc1a3
Solute carrier family 1 member 3.
    
 0.540
ENSECRP00000011282
annotation not available
    
 0.540
ccdc77
Coiled-coil domain containing 77.
    
 0.540
slc1a1
Solute carrier family 1 member 1.
    
 0.540
LOC114661548
Excitatory amino acid transporter 5-like.
    
 0.540
slc1a5
Solute carrier family 1 member 5.
    
 0.540
LOC114662851
Excitatory amino acid transporter 1-like.
    
 0.540
slc1a4
Solute carrier family 1 member 4.
    
 0.540
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.