STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cfap300Cilia and flagella associated protein 300. (265 aa)    
Predicted Functional Partners:
rps27a
Ribosomal protein S27a.
    
 0.762
lats2
Large tumor suppressor kinase 2.
    
 0.754
lats1
Large tumor suppressor kinase 1.
    
 0.754
ENSECRP00000009890
annotation not available
    
 0.727
birc6
Baculoviral IAP repeat containing 6.
    
 0.711
itsn2
Intersectin 2.
    
  0.704
LOC114653337
Serine/threonine-protein kinase Sgk3.
    
 0.674
ripk4
Receptor interacting serine/threonine kinase 4.
    
  0.673
LOC114649297
Transcriptional enhancer factor TEF-5-like.
    
 0.646
ENSECRP00000007459
annotation not available
    
 0.646
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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