STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
col20a1Collagen type XX alpha 1 chain. (1546 aa)    
Predicted Functional Partners:
slc35c2
Solute carrier family 35 member C2.
 
      0.851
ENSECRP00000011256
annotation not available
    
  0.735
tep1
Telomerase associated protein 1.
    
  0.616
tep1-2
Telomerase associated protein 1.
    
  0.616
LOC114656897
Complement C1q subcomponent subunit C-like.
  
 
 
0.604
lig1
DNA ligase 1.
    
 0.516
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.500
itgb6
Integrin subunit beta 6.
    
 0.489
itgb4
Integrin subunit beta 4.
    
 0.489
pcolce2
Procollagen C-endopeptidase enhancer 2.
    
 0.488
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.