STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114659800Probable E3 ubiquitin-protein ligase HERC6. (649 aa)    
Predicted Functional Partners:
LOC114660582
Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3-like.
    
  0.829
magi3
Membrane associated guanylate kinase, WW and PDZ domain containing 3.
    
  0.829
tp53
Tumor protein p53.
    
 0.804
ENSECRP00000004021
annotation not available
   
  0.732
tsc2
TSC complex subunit 2.
    
 0.714
trip12
Thyroid hormone receptor interactor 12.
     
0.709
tp63
Tumor protein p63.
    
 0.670
tp73
Tumor protein p73.
    
 0.670
LOC114659629
Ubiquitin-conjugating enzyme E2 L3-like.
   
 0.661
ube2l3
Ubiquitin conjugating enzyme E2 L3.
   
 0.661
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.