STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ift172Intraflagellar transport 172. (1422 aa)    
Predicted Functional Partners:
ift80
Intraflagellar transport 80.
   
 0.979
ift88
Intraflagellar transport 88.
   
 0.976
ift81
Intraflagellar transport 81.
    
 0.975
cluap1
Clusterin associated protein 1.
    
 0.972
ift52
Intraflagellar transport 52.
    
 0.969
ttc26
Tetratricopeptide repeat domain 26.
    
 0.967
LOC114661144
Tetratricopeptide repeat protein 30A.
   
 0.957
LOC114651358
Tetratricopeptide repeat protein 30A-like.
   
 0.957
ENSECRP00000013466
annotation not available
 
     0.949
ENSECRP00000017376
annotation not available
   
 0.940
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.