STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
grin3aGlutamate ionotropic receptor NMDA type subunit 3A. (1124 aa)    
Predicted Functional Partners:
grin1
Glutamate ionotropic receptor NMDA type subunit 1.
   
0.994
abhd6
Abhydrolase domain containing 6.
   
 
  0.932
abhd12
Abhydrolase domain containing 12.
   
 
  0.931
grin3b
Glutamate ionotropic receptor NMDA type subunit 3B.
  
 
0.916
gria2
Glutamate ionotropic receptor AMPA type subunit 2.
    
0.899
cask
Calcium/calmodulin dependent serine protein kinase.
   
 0.899
shisa9
Shisa family member 9.
   
 
  0.896
ppp3r1
Protein phosphatase 3 regulatory subunit B, alpha.
 
  
  0.859
pdyn
Prodynorphin.
     
 0.858
prkacb
Protein kinase cAMP-activated catalytic subunit beta.
    
 0.835
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.