STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rcn3Reticulocalbin 3. (321 aa)    
Predicted Functional Partners:
fam20c
FAM20C golgi associated secretory pathway kinase.
    
  0.681
LOC114662986
Extracellular serine/threonine protein kinase FAM20C-like.
    
  0.618
LOC114659794
Calreticulin-like.
   
 
 0.570
calr3
Calreticulin 3.
   
 
 0.570
LOC114660718
Transmembrane gamma-carboxyglutamic acid protein 2-like.
      
 0.537
hsp90b1
Heat shock protein 90 beta family member 1.
   
 0.480
dnajc10
DnaJ heat shock protein family (Hsp40) member C10.
   
 
 0.479
hspa5
Heat shock protein family A (Hsp70) member 5.
   
 
 0.438
med25
Mediator complex subunit 25.
      
 0.428
nosip
Nitric oxide synthase interacting protein.
      
 0.422
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.