STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114660259GTP-binding protein SAR1a. (198 aa)    
Predicted Functional Partners:
preb
Prolactin regulatory element binding.
   
 0.986
sec31a
SEC31 homolog A, COPII coat complex component.
   
 0.981
sec31b
SEC31 homolog B, COPII coat complex component.
   
 0.981
sec13
SEC13 homolog, nuclear pore and COPII coat complex component.
   
 0.981
LOC114665544
Protein transport protein Sec23A.
    
 0.975
sec23a
Sec23 homolog A, coat complex II component.
    
 0.975
sec24c
SEC24 homolog C, COPII coat complex component.
   
 
 0.968
sec24a
SEC24 homolog A, COPII coat complex component.
   
 0.967
sec24b
SEC24 homolog B, COPII coat complex component.
   
 0.967
sec24d
SEC24 homolog D, COPII coat complex component.
   
 
 0.959
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.