STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
vsnl1Visinin like 1. (191 aa)    
Predicted Functional Partners:
cask
Calcium/calmodulin dependent serine protein kinase.
    
 0.834
pi4kb
Phosphatidylinositol 4-kinase beta.
    
 
 0.819
ENSECRP00000009191
annotation not available
    
 0.696
myo3b
Myosin IIIB.
    
 0.696
LOC114654330
myosin-IIIb-like.
    
 0.696
ENSECRP00000008196
annotation not available
    
 0.656
ENSECRP00000008496
annotation not available
    
 0.656
kcnd1
Potassium voltage-gated channel subfamily D member 1.
    
 0.656
LOC114650950
E3 SUMO-protein ligase RanBP2-like.
  
 0.645
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.640
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.