LOC114660260 protein (Erpetoichthys calabaricus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC114660260

GTP-binding protein SAR1a-like. (187 aa)

Predicted Functional Partners:

preb

0.980

LOC114665544

0.963

sec23a

0.963

sec31a

0.961

sec31b

0.961

sec24a

0.955

sec24b

0.955

sec13

0.939

LOC114642651

0.934

ankrd40

0.924

Your Current Organism:

Erpetoichthys calabaricus

NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC114642651	LOC114660260	ENSECRP00000023687	ENSECRP00000013533	Circularly permutated Ras protein 1-like.	GTP-binding protein SAR1a-like.	0.934
LOC114642651	ankrd40	ENSECRP00000023687	ENSECRP00000033410	Circularly permutated Ras protein 1-like.	Ankyrin repeat domain 40.	0.918
LOC114642651	preb	ENSECRP00000023687	ENSECRP00000006994	Circularly permutated Ras protein 1-like.	Prolactin regulatory element binding.	0.832
LOC114642651	sec13	ENSECRP00000023687	ENSECRP00000027306	Circularly permutated Ras protein 1-like.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.992
LOC114642651	sec24a	ENSECRP00000023687	ENSECRP00000013554	Circularly permutated Ras protein 1-like.	SEC24 homolog A, COPII coat complex component.	0.958
LOC114642651	sec24b	ENSECRP00000023687	ENSECRP00000033936	Circularly permutated Ras protein 1-like.	SEC24 homolog B, COPII coat complex component.	0.958
LOC114642651	sec31a	ENSECRP00000023687	ENSECRP00000009636	Circularly permutated Ras protein 1-like.	SEC31 homolog A, COPII coat complex component.	0.918
LOC114642651	sec31b	ENSECRP00000023687	ENSECRP00000024108	Circularly permutated Ras protein 1-like.	SEC31 homolog B, COPII coat complex component.	0.918
LOC114660260	LOC114642651	ENSECRP00000013533	ENSECRP00000023687	GTP-binding protein SAR1a-like.	Circularly permutated Ras protein 1-like.	0.934
LOC114660260	LOC114665544	ENSECRP00000013533	ENSECRP00000019947	GTP-binding protein SAR1a-like.	Protein transport protein Sec23A.	0.963
LOC114660260	ankrd40	ENSECRP00000013533	ENSECRP00000033410	GTP-binding protein SAR1a-like.	Ankyrin repeat domain 40.	0.924
LOC114660260	preb	ENSECRP00000013533	ENSECRP00000006994	GTP-binding protein SAR1a-like.	Prolactin regulatory element binding.	0.980
LOC114660260	sec13	ENSECRP00000013533	ENSECRP00000027306	GTP-binding protein SAR1a-like.	SEC13 homolog, nuclear pore and COPII coat complex component.	0.939
LOC114660260	sec23a	ENSECRP00000013533	ENSECRP00000023858	GTP-binding protein SAR1a-like.	Sec23 homolog A, coat complex II component.	0.963
LOC114660260	sec24a	ENSECRP00000013533	ENSECRP00000013554	GTP-binding protein SAR1a-like.	SEC24 homolog A, COPII coat complex component.	0.955
LOC114660260	sec24b	ENSECRP00000013533	ENSECRP00000033936	GTP-binding protein SAR1a-like.	SEC24 homolog B, COPII coat complex component.	0.955
LOC114660260	sec31a	ENSECRP00000013533	ENSECRP00000009636	GTP-binding protein SAR1a-like.	SEC31 homolog A, COPII coat complex component.	0.961
LOC114660260	sec31b	ENSECRP00000013533	ENSECRP00000024108	GTP-binding protein SAR1a-like.	SEC31 homolog B, COPII coat complex component.	0.961
LOC114665544	LOC114660260	ENSECRP00000019947	ENSECRP00000013533	Protein transport protein Sec23A.	GTP-binding protein SAR1a-like.	0.963
LOC114665544	ankrd40	ENSECRP00000019947	ENSECRP00000033410	Protein transport protein Sec23A.	Ankyrin repeat domain 40.	0.918