STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cdca7Cell division cycle associated 7. (388 aa)    
Predicted Functional Partners:
wrn
WRN RecQ like helicase.
   
 0.993
rad1
RAD1 checkpoint DNA exonuclease.
    
 0.991
LOC114644882
Cell cycle checkpoint protein RAD17-like.
   
 0.991
rfc2
Replication factor C subunit 2.
   
 0.979
slf1
SMC5-SMC6 complex localization factor 1.
    
 0.965
rfc4
Replication factor C subunit 4.
   
 0.965
hus1
HUS1 checkpoint clamp component.
    
 0.964
ENSECRP00000025620
annotation not available
    
 0.964
rfc3
Replication factor C subunit 3.
   
 0.960
rfc5
Replication factor C subunit 5.
   
 0.950
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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