STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
raver2Ribonucleoprotein, PTB binding 2. (842 aa)    
Predicted Functional Partners:
eprs1
glutamyl-prolyl-tRNA synthetase 1.
   
 0.973
fau
FAU ubiquitin like and ribosomal protein S30 fusion.
    
   0.769
LOC114666740
Ubiquitin-like protein FUBI.
    
   0.769
hnrnpk
Heterogeneous nuclear ribonucleoprotein K.
   
 0.736
dhx9
DExH-box helicase 9.
   
 0.670
ncbp2
Nuclear cap binding protein subunit 2.
    
  0.640
rps6
Ribosomal protein S6.
   
   0.621
rps20
Ribosomal protein S20.
   
   0.594
rps8
Ribosomal protein S8.
   
   0.578
rps3
Ribosomal protein S3.
   
   0.572
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.