STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114655588Tricarboxylate transport protein, mitochondrial-like. (351 aa)    
Predicted Functional Partners:
cs
Citrate synthase.
   
 
 0.904
pole2
DNA polymerase epsilon 2, accessory subunit.
   
   0.808
c12hxorf56
Chromosome 12 CXorf56 homolog.
    
   0.794
c17h15orf40
Chromosome 17 C15orf40 homolog.
    
   0.794
drg1
Developmentally regulated GTP binding protein 1.
    
   0.794
slc25a4
Solute carrier family 25 member 4.
   
 
0.752
LOC114650393
ADP/ATP translocase 3.
   
 
0.752
LOC114669138
Clathrin heavy chain 1-like.
 
 
 
 0.699
drg2
Developmentally regulated GTP binding protein 2.
    
   0.681
LOC114663960
Progranulin-like.
    
   0.681
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.