STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gemin5Gem nuclear organelle associated protein 5. (1447 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.997
ddx20
DEAD-box helicase 20.
   
 0.994
gemin4
Gem nuclear organelle associated protein 4.
   
 0.988
gemin8
Gem nuclear organelle associated protein 8.
    
 0.986
ENSECRP00000000053
annotation not available
    
 0.985
smn1
Survival of motor neuron 1, telomeric.
   
 0.985
strap
Serine/threonine kinase receptor associated protein.
    
 0.984
snrpd1
Small nuclear ribonucleoprotein D1 polypeptide.
    
 0.968
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
    
 0.967
snrpd3
Small nuclear ribonucleoprotein D3 polypeptide.
   
 0.964
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.