STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
farp2FERM, ARH/RhoGEF and pleckstrin domain protein 2. (1029 aa)    
Predicted Functional Partners:
cdc42
Cell division cycle 42.
    
 0.866
LOC114658015
Cell division control protein 42 homolog.
    
 0.862
src
SRC proto-oncogene, non-receptor tyrosine kinase.
    
  0.842
rap1b
RAP1B, member of RAS oncogene family.
     
 0.709
LOC114647779
Ras-related protein Rap-1A.
     
 0.709
pip5k1c
Phosphatidylinositol-4-phosphate 5-kinase type 1 gamma.
     
 0.653
nrp1
Neuropilin 1.
     
 0.650
ENSECRP00000009847
annotation not available
     
 0.623
ENSECRP00000010547
annotation not available
     
 0.623
met
MET proto-oncogene, receptor tyrosine kinase.
    
  0.620
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.