STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ube4aUbiquitination factor E4A. (1060 aa)    
Predicted Functional Partners:
ufd1
Ubiquitin recognition factor in ER associated degradation 1.
    
 
 0.951
birc6
Baculoviral IAP repeat containing 6.
   
 0.949
yod1
YOD1 deubiquitinase.
    
 
 0.946
trip12
Thyroid hormone receptor interactor 12.
   
 0.945
nsfl1c
NSFL1 cofactor.
    
 
 0.919
ubqln1
Ubiquilin 1.
   
 0.871
ubqln4
Ubiquilin 4.
   
 0.871
faap100
FA core complex associated protein 100.
    
 
 0.869
nploc4
NPL4 homolog, ubiquitin recognition factor.
    
 
 0.869
vcp
Valosin containing protein.
  
 
 0.848
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.