STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSECRP00000013954annotation not available (231 aa)    
Predicted Functional Partners:
ENSECRP00000028092
annotation not available
   
 
 0.635
rpf2
Ribosome production factor 2 homolog.
   
 
 0.635
rrs1
Ribosome biogenesis regulator 1 homolog.
   
   0.626
rpl11
Ribosomal protein L11.
    
 
 0.596
LOC114651820
60S ribosomal protein L5-like.
    
 
 0.590
rpl5
Ribosomal protein L5.
    
 
 0.590
ca8
Carbonic anhydrase 8.
  
 
 
0.540
grwd1
Glutamate rich WD repeat containing 1.
   
  
 0.496
nle1
Notchless homolog 1.
   
  
 0.459
nsun6
NOP2/Sun RNA methyltransferase 6.
   
   0.452
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.