STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aldh16a1Aldehyde dehydrogenase 16 family member A1. (755 aa)    
Predicted Functional Partners:
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
  
 
 0.938
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.934
abat
4-aminobutyrate aminotransferase.
  
 0.920
aldh6a1
Aldehyde dehydrogenase 6 family member A1.
   
0.916
dera
Deoxyribose-phosphate aldolase.
 0.915
gart
annotation not available
  
 
 0.915
h6pd
Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.
  
 0.909
eprs1
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.907
agxt2
Alanine--glyoxylate aminotransferase 2.
 
 0.906
glud1
Glutamate dehydrogenase 1.
  
 0.906
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.