STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
syt1Synaptotagmin 1. (424 aa)    
Predicted Functional Partners:
snap25
Synaptosome associated protein 25.
   
 0.944
ENSECRP00000033659
annotation not available
   
 0.944
ston2
Stonin 2.
   
 0.918
vamp2
Vesicle associated membrane protein 2.
   
 0.887
LOC114657998
Vesicle-associated membrane protein 1-like.
   
 0.887
ENSECRP00000013198
annotation not available
   
 0.866
LOC114646070
Protein S100-A13-like.
    
 
 0.851
vamp3
Vesicle associated membrane protein 3.
    
 0.843
ENSECRP00000026725
annotation not available
    
 0.843
stx1a
Syntaxin 1A.
   
 0.821
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.