STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mettl8Methyltransferase like 8. (398 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
    
   0.644
LOC114666256
Presenilin-2-like.
    
 
 0.467
LOC114666606
Presenilin-1-like.
    
 
 0.467
nsun5
NOP2/Sun RNA methyltransferase 5.
 
 
  
 0.456
eef1akmt2
EEF1A lysine methyltransferase 2.
   
  
 0.452
mettl25
Methyltransferase like 25.
      
 0.432
trmt1l
tRNA methyltransferase 1 like.
   
 
 0.426
trmt1
tRNA methyltransferase 1.
   
 
 0.426
rrp1b
Ribosomal RNA processing 1B.
   
    0.418
mrto4
MRT4 homolog, ribosome maturation factor.
   
    0.418
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.