STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdgfbPlatelet derived growth factor subunit B. (479 aa)    
Predicted Functional Partners:
pdgfrb
Platelet derived growth factor receptor beta.
   
 0.996
pdgfa
Platelet derived growth factor subunit A.
  
 
0.964
flt3
Fms related tyrosine kinase 3.
   
 0.950
pdgfra
Platelet derived growth factor receptor alpha.
   
 0.950
flt1
Fms related tyrosine kinase 1.
   
 0.938
pdgfc
Platelet derived growth factor C.
     
 0.929
pdgfd
Platelet derived growth factor D.
     
 0.927
tek
TEK receptor tyrosine kinase.
    
 0.924
kit
KIT proto-oncogene, receptor tyrosine kinase.
   
 0.908
csf1r
Colony stimulating factor 1 receptor.
   
 0.908
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.