STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
caskCalcium/calmodulin dependent serine protein kinase. (926 aa)    
Predicted Functional Partners:
lin7a
Lin-7 homolog A, crumbs cell polarity complex component.
    
 0.999
lin7b
Lin-7 homolog B, crumbs cell polarity complex component.
    
 0.999
lin7c
Lin-7 homolog C, crumbs cell polarity complex component.
    
 0.999
apba1
Amyloid beta precursor protein binding family A member 1.
   
 0.998
LOC114662932
Amyloid-beta A4 precursor protein-binding family A member 3-like.
   
 0.998
LOC114668124
Amyloid-beta A4 precursor protein-binding family A member 2-like.
   
 0.998
LOC114642367
Amyloid-beta A4 precursor protein-binding family A member 2-like.
   
 0.998
grin1
Glutamate ionotropic receptor NMDA type subunit 1.
   
 0.996
ENSECRP00000004282
annotation not available
   
 0.984
epb41l3
Erythrocyte membrane protein band 4.1 like 3.
   
 0.984
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.