STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
irf3Interferon regulatory factor 3. (513 aa)    
Predicted Functional Partners:
crebbp
CREB binding protein.
    
 0.995
ep300
E1A binding protein p300.
    
 0.986
sting1
Stimulator of interferon response cGAMP interactor 1.
    
 0.983
tbk1
TANK binding kinase 1.
   
 0.982
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.976
ticam1
Toll like receptor adaptor molecule 1.
    
 0.954
irf7
Interferon regulatory factor 7.
  
  
0.922
LOC114654630
Transmembrane emp24 domain-containing protein 7-like.
    
 0.906
ENSECRP00000018232
annotation not available
    
 0.906
ENSECRP00000027802
annotation not available
    
 0.906
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.