STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gadd45aGrowth arrest and DNA damage inducible alpha. (244 aa)    
Predicted Functional Partners:
map3k4
Mitogen-activated protein kinase kinase kinase 4.
    
 0.922
LOC114648872
Proliferating cell nuclear antigen.
    
 0.896
cdk1
Cyclin dependent kinase 1.
    
  0.867
tp53
Tumor protein p53.
   
 
 0.859
ccnb3
Cyclin B3.
    
  0.854
ccnb2
Cyclin B2.
    
  0.854
cntd2
Cyclin N-terminal domain containing 2.
    
  0.851
gadd45b
Growth arrest and DNA damage inducible beta.
  
  
 
0.845
LOC114654360
Growth arrest and DNA damage-inducible protein GADD45 gamma-like.
  
  
 
0.845
ccnb1
Cyclin B1.
    
  0.830
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.