STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sfmbt2Scm like with four mbt domains 2. (897 aa)    
Predicted Functional Partners:
kdm2a
Lysine demethylase 2A.
    
 0.784
fbxl19
F-box and leucine rich repeat protein 19.
    
 0.784
kdm2b
Lysine demethylase 2B.
    
 0.784
yaf2
YY1 associated factor 2.
    
 0.782
kdm6b
Lysine demethylase 6B.
    
 0.774
kdm6a
Lysine demethylase 6A.
    
 0.769
bard1
BRCA1 associated RING domain 1.
    
  0.752
LOC114651456
E3 ubiquitin-protein ligase RING2-A-like.
    
 0.687
rnf2
Ring finger protein 2.
    
 0.687
pcgf5
Polycomb group ring finger 5.
   
 0.658
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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