STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tifaTRAF interacting protein with forkhead associated domain. (156 aa)    
Predicted Functional Partners:
traf6
TNF receptor associated factor 6.
    
 0.990
alpk1
Alpha kinase 1.
   
 
 0.857
traf4
TNF receptor associated factor 4.
    
 0.718
rps27a
Ribosomal protein S27a.
    
  0.699
LOC114657700
TNF receptor-associated factor 2-like.
    
 0.690
traf2
TNF receptor associated factor 2.
    
 0.690
LOC114657073
TNF receptor-associated factor 2-like.
    
 0.690
irak1
Interleukin 1 receptor associated kinase 1.
    
 0.684
LOC114651186
TNF receptor-associated factor 3-like.
    
 0.665
traf5
TNF receptor associated factor 5.
    
 0.665
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.