STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114654772Cathepsin L1-like. (338 aa)    
Predicted Functional Partners:
rps14
Ribosomal protein S14.
   
 0.822
ctsb
Cathepsin B.
  
0.788
ctsh
Cathepsin H.
  
 
0.760
ctsw
Cathepsin W.
  
0.730
ctsc
Cathepsin C.
  
0.711
ctsz
Cathepsin Z.
  
0.702
ctso
Cathepsin O.
  
0.700
LOC114663960
Progranulin-like.
   
 0.693
LOC114653391
Cathepsin L1-like.
  
  
 
0.678
grn
Granulin precursor.
   
 0.678
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.