STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbm17RNA binding motif protein 17. (421 aa)    
Predicted Functional Partners:
dhx15
DEAH-box helicase 15.
   
 0.999
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.996
snrpa1
Small nuclear ribonucleoprotein polypeptide A.
   
 0.995
smndc1
Survival motor neuron domain containing 1.
   
 
  0.982
ddx46
DEAD-box helicase 46.
   
 0.982
puf60
poly(U) binding splicing factor 60.
   
 
0.980
phf5a
PHD finger protein 5A.
   
 
 0.980
sugp1
SURP and G-patch domain containing 1.
   
 
 0.972
sf3b1
Splicing factor 3b subunit 1.
   
 0.971
LOC114662242
U2 snRNP-associated SURP motif-containing protein-like.
   
 0.961
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.