STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddah1Dimethylarginine dimethylaminohydrolase 1. (186 aa)    
Predicted Functional Partners:
wrn
WRN RecQ like helicase.
   
 0.823
med6
Mediator complex subunit 6.
    
 0.822
med23
Mediator complex subunit 23.
     
 0.797
med14
Mediator complex subunit 14.
     
 0.788
med22
Mediator complex subunit 22.
     
 0.776
med18
Mediator complex subunit 18.
     
 0.769
ccnc
Cyclin C.
     
 0.755
agxt2
Alanine--glyoxylate aminotransferase 2.
  
 
 0.753
sgpl1
Sphingosine-1-phosphate lyase 1.
    
 0.753
ass1
Argininosuccinate synthase 1.
    
 0.740
Your Current Organism:
Erpetoichthys calabaricus
NCBI taxonomy Id: 27687
Other names: Calamoichthys calabaricus, E. calabaricus, reedfish
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.